In OWL Annotation Properties are 'non-logical' properties that connect individuals, classes, ObjectProperty, other annotation properties etc with other object or with literal values. Technically, it connects the IRI of these entities.
The 'non-logical' aspect means they are ignored for reasoning purposes.
They are primarily used for metadata: labels, definitions, synonyms, attribution, notes and comments, etc.
See the OWL Primer for more details.
Annotation Properties in RO
RO makes use of annotation properties from other ontologies (e.g. RDFS, IAO) and in addition defines annotation properties that can be used in other ontologies.
See flat list of RO annotation properties in OntoBee
Or start from a root annotation property, e.g. http://purl.obolibrary.org/obo/RO_0002416
In RO we aim to have comprehensive metadata for each ObjectProperty declared. In practice we often fall short, but this is something we are striving to improve.
Metadata is provided via annotation assertions using annotation properties (APs), and other object types, from a variety of ontologies, including:
- dublin core
We have also defined APs within RO. Some of these may migrate to IAO.
Like all OBO ontologies, definitions are provided using an http://purl.obolibrary.org/obo/IAO_0000115 'definition' AP.
We strive to give each OP a definition. In practice we may omit definitions for OPs that are trivially the inverse of another defined OP (TODO link to tracker).
Definition Source and Attribution
- curator notes: aimed at curator users of ontologies
- editor notes: primarily internal notes for other RO editors, but exposed for the sake of transparency
Synonyms and alternate terms
'OBO foundry unique label' is used where the primary label could potentially be ambiguous when compared to other ontologies.
Provenance and Attribution
We currently use IAO 'term editor' APs to record a literal with the full name of the person who added the term to the ontology.
The IAO def of this is: "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"
We may decide to use ORCIDs in future.
NOTE: we have recently switched to using the created_by tag as this is supported directly in Protege. We need to go back and standardize use of some of these properties.